SRX15206446
GSM6122845: w1118 HP1-ChIP biological replicate 1; Drosophila melanogaster; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Su(var)205

Cell type

Cell type Class
Adult
Cell type
Ovary
NA
NA

Attributes by original data submitter

Sample

source_name
ovary
tissue
ovary
genotype
w1118;;;
antibody
anti-HP1 antibody (DSHB C1A9)

Sequenced DNA Library

library_name
GSM6122845
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin immunoprecipitation (ChIP) was carried out according to Lee et al. (2006) ChIP-seq libraries were prepared using the NEB Next Ultra II DNA Library for Illumina (NEB).

Sequencing Platform

instrument_model
Illumina NovaSeq 6000

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
11302710
Reads aligned (%)
85.2
Duplicates removed (%)
73.1
Number of peaks
2556 (qval < 1E-05)

dm3

Number of total reads
11302710
Reads aligned (%)
85.6
Duplicates removed (%)
70.5
Number of peaks
3543 (qval < 1E-05)

Base call quality data from DBCLS SRA